The duo behind the 49ers’ two Super Bowl appearances over the past six years — coach Kyle Shanahan and general manager John Lynch — will return next season after the team’s losing record in 2024, according to owner Jed York.

“They’re not going anywhere,” York told the San Francisco Standard on Monday afternoon.

The 49ers are 6-10 and eliminated from playoff contention, just one year after appearing in the Super Bowl and losing to the Kansas City Chiefs in overtime.

In his conference call with reporters on Tuesday morning, Shanahan was asked if York’s comments make him feel more confident about his future with the team.

“Not really,” Shanahan said. “I’ve got a good relationship with Jed and we speak almost every day. Hearing stuff in the media doesn’t really change stuff for me, it’s more what I have between him and myself.”

That relationship has always been consistent?

“Definitely,” Shanahan added. “Jed is very easy to talk to. We’ve known each other for nine years and feel very fortunate for how he is through the good and the bad and the communication never really changes regardless of what’s going on.”

On Monday, ESPN reported that the 49ers were not interested in trading Shanahan, who has led the team to two Super Bowl berths.